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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48897882_48898454_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48897882 - 48898454
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAATCTCTAAAT
Flanking Amino Acid:
WHCRDGCLIKLHRHHLGLCW
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
85.9
0.81
0.6
84.9
22.8
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
54.3
0.21
1.7
71.03
39

Associated Gene:

Gene:
C12orf29
Ensembl Gene ID:
ENSAPLG00000013468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039930
48897693 - 48904562
6870
ENSAPLT00000014026
48897693 - 48904297
6605