About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48901988_48904207_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
48901988 - 48904207
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCGGG
5'SS Class:
weak_major
3'SS Sequence:
CTGGCATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GGTTTTATACCT
Flanking Amino Acid:
GGALGQAAAAGRPYLWARLD
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
45.2
44.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
65
0.34
0.9
55.3
40.4
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
49
0
1.9
69.8
41.1

Associated Gene:

Gene:
C12orf29
Ensembl Gene ID:
ENSAPLG00000013468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039930
48897693 - 48904562
6870