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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48902644_48904207_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48902644 - 48904207
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCGGG
5'SS Class:
weak_major
3'SS Sequence:
GTCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTAAAGTACCT
Flanking Amino Acid:
EEPSAKRQRQPFKVLATETL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
45.2
44.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.7
0.82
0.7
84.4
30.6
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
42.3
-0.5
2.5
70.98
45.3

Associated Gene:

Gene:
C12orf29
Ensembl Gene ID:
ENSAPLG00000013468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014026
48897693 - 48904297
6605