About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48911055_48912675_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48911055 - 48912675
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAACAAG
5'SS Class:
major
3'SS Sequence:
ATATTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATCTTTTAAAA
Flanking Amino Acid:
DEEDIEDKENNDFNLLAKTA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.1
56.2
42.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
73.9
36
Minor 5ss
40.3
-1.1
3
53.7
44.5
Minor BPS
59.8
0.3
1.3
65.51
33.9

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033692
48910159 - 48920974
10816
ENSAPLT00000031074
48910159 - 48920974
10816
ENSAPLT00000014036
48910159 - 48920974
10816