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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48912954_48914202_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48912954 - 48914202
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
AGCAGCTAAAAT
Flanking Amino Acid:
LEAIKRDLQKGDGNTNPTKL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
79.2
0.66
0.9
69.5
41.6
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
43.2
-0.4
2.1
57.03
45.1

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033692
48910159 - 48920974
10816
ENSAPLT00000031074
48910159 - 48920974
10816
ENSAPLT00000014036
48910159 - 48920974
10816