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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48914323_48914979_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48914323 - 48914979
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTACTGTATTA
Flanking Amino Acid:
RTDHRSFENGVCQCKIMQYH
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74
30.6
Major BPS
80
0.75
1
78.6
31
Major PPT
82.1
0.72
0.6
81.8
23.1
Minor 5ss
38.3
-1.3
3
50.5
46.1
Minor BPS
46.1
-0.3
2.2
61.9
39

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031074
48910159 - 48920974
10816