Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48915043_48915462_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48915043 - 48915462

Intron Length:

420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGCATA

5'SS Class:

major

3'SS Sequence:

TCATTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GATTTTTTGATA

Flanking Amino Acid:

RDAWSSFEQTGGDCFVAQKN

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

72.4

38.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

81.2

0.7

0.8

77.5

Minor 5ss

49.2

-0

2.5

62.6

44.1

Minor BPS

63.3

0.41

1.1

66.76

33.3

Associated Gene:

Gene:

C12orf50

Ensembl Gene ID:

ENSAPLG00000013487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031074

48910159 - 48920974

10816