About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48915571_48915956_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48915571 - 48915956
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCTATTTTAACT
Flanking Amino Acid:
PIASKYSNVKATSCSELVKK
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73
0.52
0.8
70.7
35.7
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
68
0.64
1.3
76.69
40.1

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033692
48910159 - 48920974
10816
ENSAPLT00000031074
48910159 - 48920974
10816
ENSAPLT00000014036
48910159 - 48920974
10816