About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48916065_48916284_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48916065 - 48916284
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
CTTCCACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
RNLSNTVTGKENHTSNPKVK
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.1
0.61
0.8
74.2
29.7
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033692
48910159 - 48920974
10816
ENSAPLT00000031074
48910159 - 48920974
10816
ENSAPLT00000014036
48910159 - 48920974
10816