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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48916486_48918619_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48916486 - 48918619
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
VQEPKFNGSMDKYTSGSCNA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.5
0.73
0.7
77.6
30.6
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
C12orf50
Ensembl Gene ID:
ENSAPLG00000013487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031074
48910159 - 48920974
10816
ENSAPLT00000014036
48910159 - 48920974
10816