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Intron Name: Anas_platyrhynchos_platyrhynchos_1_48916486_48920162_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48916486 - 48920162

Intron Length:

3677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGACCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TCTATTTTGACC

Flanking Amino Acid:

VQEPKFNGSMEPRRNGNEYK

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

71.9

34.5

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

73.3

0.52

0.9

66.5

38.9

Minor 5ss

35.6

-1.6

2.8

36.8

40.4

Minor BPS

63.7

0.41

1.3

69.36

36.6

Associated Gene:

Gene:

C12orf50

Ensembl Gene ID:

ENSAPLG00000013487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033692

48910159 - 48920974

10816