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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48934532_48945250_R

Intron Information:

Intron Rank:
140197
Intron Class:
major
Intron Phase:
Intron Coordinates:
48934532 - 48945250
Intron Length:
10719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
85.7
33.4
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
62.9
0.38
1.5
71.66
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022811
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030254
48934263 - 48945982
11720