About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49039827_49043557_F

Intron Information:

Intron Rank:
125416
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
49039827 - 49043557
Intron Length:
3731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTACAAAACCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCTACAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
50.8
0.02
1
41.2
37
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
54.5
0.14
1.9
74.18
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017577
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041010
49039805 - 49045016
5212