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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49081864_49086050_R

Intron Information:

Intron Rank:
136584
Intron Class:
major
Intron Phase:
Intron Coordinates:
49081864 - 49086050
Intron Length:
4187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
GTCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83
0.74
0.9
80.3
37.1
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
49.5
0.05
2
73.73
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037674
49081389 - 49092513
11125