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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49096888_49098181_F

Intron Information:

Intron Rank:
134102
Intron Class:
major
Intron Phase:
Intron Coordinates:
49096888 - 49098181
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAT
U12 Branch Point Sequence:
CTGTGCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
71.8
28.6
Major BPS
66.1
0.4
1.3
59.3
47.1
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
31.9
-2.1
3
35
42.5
Minor BPS
59.3
0.37
1.8
74.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022076
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035364
49096008 - 49099119
3112