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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49230655_49235014_R

Intron Information:

Intron Rank:
145964
Intron Class:
major
Intron Phase:
Intron Coordinates:
49230655 - 49235014
Intron Length:
4360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.8
0.38
0.9
61.7
34
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
51.5
0.13
2
76.67
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043523
49230350 - 49236140
5791