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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49242132_49324734_F

Intron Information:

Intron Rank:
150235
Intron Class:
major
Intron Phase:
Intron Coordinates:
49242132 - 49324734
Intron Length:
82603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAACT
5'SS Class:
major
3'SS Sequence:
TGTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTACATGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71
39
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.72
0.8
74.4
40.4
Minor 5ss
34.8
-1.7
3.3
50.3
45.7
Minor BPS
53.6
0.19
1.8
78.15
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037346
49234035 - 49324773
90739