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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49303115_49317472_R

Intron Information:

Intron Rank:
142021
Intron Class:
major
Intron Phase:
Intron Coordinates:
49303115 - 49317472
Intron Length:
14358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTTTACATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.2
0.77
0.8
77.8
35
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
58.7
0.27
2
78.53
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023719
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040346
49302991 - 49322823
19833