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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49553220_49596873_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49553220 - 49596873
Intron Length:
43654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
MVTLLYTFLHM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41
Major BPS
71.4
0.53
1
67
39.8
Major PPT
87
0.83
0.6
84
24.2
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
MGAT4C
Ensembl Gene ID:
ENSAPLG00000002108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002107
49553217 - 49604128
50912