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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49597030_49601373_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49597030 - 49601373
Intron Length:
4344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTAATA
Flanking Amino Acid:
NLYIEDGYVLEGDKQLIRET
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71
0.47
0.9
67
33
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
57.5
0.23
1.9
73.29
38.6

Associated Gene:

Gene:
MGAT4C
Ensembl Gene ID:
ENSAPLG00000002108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002107
49553217 - 49604128
50912