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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49601522_49602971_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49601522 - 49602971
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTGTCTGAATT
Flanking Amino Acid:
YLAGTPLPRKRYLTIGLSSV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
86.6
0.82
0.8
83.2
32
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
67.8
0.64
1.5
84.15
37

Associated Gene:

Gene:
MGAT4C
Ensembl Gene ID:
ENSAPLG00000002108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002107
49553217 - 49604128
50912