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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49639889_49646711_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49639889 - 49646711
Intron Length:
6823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTACATTAAGT
Flanking Amino Acid:
DLLTNMYTSKINRAKLPYWK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
58.8
0.35
2
79.12
42.3

Associated Gene:

Gene:
NTS
Ensembl Gene ID:
ENSAPLG00000018978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047915
49638064 - 49651358
13295
ENSAPLT00000042033
49638064 - 49651535
13472