About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49650884_49651396_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49650884 - 49651396
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTCTGAG
5'SS Class:
major
3'SS Sequence:
CTTTACTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TGGACTTTACTT
Flanking Amino Acid:
PHEAQHPARAESGAARMRAQ
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
61
39.7
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
81.4
0.71
0.8
73.6
36.6
Minor 5ss
38.2
-1.3
3.1
48.2
47.9
Minor BPS
54.5
0.22
1.7
68.89
42.6

Associated Gene:

Gene:
NTS
Ensembl Gene ID:
ENSAPLG00000018978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042033
49638064 - 49651535
13472