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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49670757_49696549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49670757 - 49696549
Intron Length:
25793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
RNLLKTRHKNRSPSKEMASN
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
RASSF9
Ensembl Gene ID:
ENSAPLG00000001547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001541
49670710 - 49697883
27174