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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4984418_4985146_F

Intron Information:

Intron Rank:
150473
Intron Class:
major
Intron Phase:
Intron Coordinates:
4984418 - 4985146
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AAATACATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
84.1
0.77
0.6
84.1
23.8
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
49.4
0.03
1.9
68.8
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025269
4983745 - 4993280
9536