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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4988043_4993126_F

Intron Information:

Intron Rank:
150475
Intron Class:
major
Intron Phase:
Intron Coordinates:
4988043 - 4993126
Intron Length:
5084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.2
0.81
0.7
82.8
27.4
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025269
4983745 - 4993280
9536