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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49965245_49978520_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49965245 - 49978520
Intron Length:
13276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTATATGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATCTAAATT
Flanking Amino Acid:
VLPRTDSYPQIQNNLWAGNT
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.3
0.64
1
69.6
45.4
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
56.6
0.29
1.7
71.83
39.3

Associated Gene:

Gene:
ALX1
Ensembl Gene ID:
ENSAPLG00000001231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001229
49964688 - 49985172
20485