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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49982596_49984940_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49982596 - 49984940
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTGTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTCCCCCACCT
Flanking Amino Acid:
DRTSPCQDNNVNYGITKVEG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.3
0.48
1
64.7
40
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
43.9
-0.3
2.1
62.27
47.2

Associated Gene:

Gene:
ALX1
Ensembl Gene ID:
ENSAPLG00000001231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001229
49964688 - 49985172
20485