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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49995961_49998383_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49995961 - 49998383
Intron Length:
2423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
GACCTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTGACCT
Flanking Amino Acid:
EDKFLCCVFKMTDH*
Intron Amino Acid Position:
1559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
69.2
36.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72
0.5
0.9
69
36.7
Minor 5ss
36.5
-1.5
3
46.1
42.5
Minor BPS
62.4
0.47
1.7
83.97
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022146
49994995 - 50110314
115320