About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_49999888_50013138_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49999888 - 50013138
Intron Length:
13251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTGTTTAATT
Flanking Amino Acid:
QPHRHSARSSKKNVSTPDKS
Intron Amino Acid Position:
1459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.4
0.46
1
69.4
41.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
68.9
0.67
1.7
84.22
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036011
49999748 - 50110314
110567
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567