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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50013260_50018666_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50013260 - 50018666
Intron Length:
5407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCACTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATGATT
Flanking Amino Acid:
ICNGGQVQLVASPVSREDTD
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.2
0.48
0.9
61
40
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
62.3
0.47
1.6
80.33
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036011
49999748 - 50110314
110567
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567