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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50041330_50042934_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50041330 - 50042934
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAAACATTATTT
Flanking Amino Acid:
TWPANAAYFEVILCWELTCD
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83.8
0.76
0.9
84.8
35.4
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
49.4
0.04
1.9
68.49
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022292
50040759 - 50110314
69556