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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50043037_50051028_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50043037 - 50051028
Intron Length:
7992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGATTTTAACT
Flanking Amino Acid:
KPRKYSNKKVDPAVRLALFK
Intron Amino Acid Position:
1320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.1
0.52
0.9
65.8
40.9
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
73.4
0.81
1.2
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567