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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50051115_50051456_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50051115 - 50051456
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
ACTATCTGAAAT
Flanking Amino Acid:
SGKEEKISEEWGFKDISTAQ
Intron Amino Acid Position:
1323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
74.6
31
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
72.3
0.5
0.8
65.4
36.2
Minor 5ss
45.7
-0.4
2.5
54.4
45.2
Minor BPS
53.6
0.19
1.6
69.2
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000036011
49999748 - 50110314
110567
ENSAPLT00000032277
49994995 - 50110314
115320