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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50051115_50052198_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50051115 - 50052198
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
ACTATCTGAAAT
Flanking Amino Acid:
YSPENLHFHGRGFKDISTAQ
Intron Amino Acid Position:
1291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
72.3
0.5
0.8
65.4
36.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
53.6
0.19
1.6
69.2
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000574
49999748 - 50110314
110567