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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50051553_50052198_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50051553 - 50052198
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTCCTATACT
Flanking Amino Acid:
YSPENLHFHGSSEKGTVSQL
Intron Amino Acid Position:
1291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
76.9
0.61
1
73.1
41.5
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
64.5
0.54
2
85.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000036011
49999748 - 50110314
110567