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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50053294_50066583_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50053294 - 50066583
Intron Length:
13290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGACTTTACT
Flanking Amino Acid:
INVDDFMFYEAALEKEWLTL
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
0.9
72.1
37
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
62.8
0.49
2
85.35
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320