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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50080848_50087711_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50080848 - 50087711
Intron Length:
6864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAA
Flanking Amino Acid:
GNPLLQERNCKPYLCKELPS
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.9
86.5
24.9
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
67.4
0.54
1.7
81.52
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567