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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50080848_50094485_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50080848 - 50094485
Intron Length:
13638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAA
Flanking Amino Acid:
LLQILSLSQNRPYLCKELPS
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.9
86.5
24.9
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
67.4
0.54
1.7
81.52
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036011
49999748 - 50110314
110567