About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50088187_50094485_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50088187 - 50094485
Intron Length:
6299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
GTTTTGTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTAAAA
Flanking Amino Acid:
LLQILSLSQNSLTELVPLNS
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.5
0.64
0.8
77.1
37.1
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
55.8
0.18
1.9
71.18
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567