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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50094614_50095356_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50094614 - 50095356
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACATTAATT
Flanking Amino Acid:
LKLQGNNLQELPRLENHVLL
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
0.8
77.8
29.9
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
73.9
0.83
1.6
90.3
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567