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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50100400_50101768_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50100400 - 50101768
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCAAGC
5'SS Class:
major
3'SS Sequence:
TCCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATACTCTTATTT
Flanking Amino Acid:
CKDLKYINVEENSIEMVDCE
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
62.5
42.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.2
0.79
0.8
83.6
31.5
Minor 5ss
45.5
-0.5
2.7
61.4
43
Minor BPS
57.9
0.33
1.6
72.4
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567