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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50104045_50104221_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50104045 - 50104221
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AGTGTTTGAAGT
Flanking Amino Acid:
AWRDKIMQHEELIMKLQLQM
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
76.8
0.6
0.9
72.4
37.8
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
47
-0.1
1.8
63.05
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567
ENSAPLT00000032277
49994995 - 50110314
115320