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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50108175_50109245_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50108175 - 50109245
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTC
Flanking Amino Acid:
LQDLEDDETTGNNYDIVPCH
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.82
0.7
85.8
28.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
57
0.2
1.5
64.67
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032277
49994995 - 50110314
115320
ENSAPLT00000022292
50040759 - 50110314
69556
ENSAPLT00000022146
49994995 - 50110314
115320
ENSAPLT00000000574
49999748 - 50110314
110567
ENSAPLT00000036011
49999748 - 50110314
110567