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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50113743_50114125_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
50113743 - 50114125
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAGG
5'SS Class:
major
3'SS Sequence:
TATGTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTATTTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
64.9
41
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.8
0.42
1.1
68
41.5
Minor 5ss
26.8
-2.7
2.8
31.3
42.4
Minor BPS
55.3
0.03
1.7
60.01
41.6

Associated Gene:

Gene:
TSPAN19
Ensembl Gene ID:
ENSAPLG00000021214
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021696
50113681 - 50125050
11370