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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50113743_50114887_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50113743 - 50114887
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAGG
5'SS Class:
major
3'SS Sequence:
ATTATATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATATTGACT
Flanking Amino Acid:
MSTEDTRQLQFKTENRKM
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
64.9
41
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
26.8
-2.7
2.8
31.3
42.4
Minor BPS
58
0.33
1.7
76.66
39.9

Associated Gene:

Gene:
TSPAN19
Ensembl Gene ID:
ENSAPLG00000021214
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022278
50113681 - 50125050
11370