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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50114981_50115102_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50114981 - 50115102
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
YLNVFNGIFLALGIMLLTFG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
TSPAN19
Ensembl Gene ID:
ENSAPLG00000021214
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041131
50112750 - 50125050
12301
ENSAPLT00000022278
50113681 - 50125050
11370
ENSAPLT00000021696
50113681 - 50125050
11370