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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50117609_50119557_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50117609 - 50119557
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGAACA
Flanking Amino Acid:
PVLVFLKKEVVHHQWNKRID
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.6
0.46
1.1
66.8
42.8
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
61.5
0.36
1.7
74.79
35.8

Associated Gene:

Gene:
TSPAN19
Ensembl Gene ID:
ENSAPLG00000021214
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045755
50112750 - 50125050
12301
ENSAPLT00000041131
50112750 - 50125050
12301
ENSAPLT00000022278
50113681 - 50125050
11370
ENSAPLT00000021696
50113681 - 50125050
11370