Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50119669_50122285_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50119669 - 50122285

Intron Length:

2617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGGAGA

5'SS Class:

major

3'SS Sequence:

ATTTATATTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

GGTACTGGAATT

Flanking Amino Acid:

WNILNAVQHNMECCGRYDVT

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

71.7

39.7

Major BPS

79.2

0.73

75.3

39.4

Major PPT

76.2

0.59

0.9

67.7

42.6

Minor 5ss

34.1

-1.8

3.2

44.2

43.7

Minor BPS

45.2

-0.2

2.1

63.1

41.2

Associated Gene:

Gene:

TSPAN19

Ensembl Gene ID:

ENSAPLG00000021214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041131

50112750 - 50125050

12301

ENSAPLT00000022278

50113681 - 50125050

11370

ENSAPLT00000021696

50113681 - 50125050

11370

ENSAPLT00000045755

50112750 - 50125050

12301