About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50123921_50124969_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50123921 - 50124969
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
GINISLLITQIFVIKLTMQL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.6
84.3
23.5
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
TSPAN19
Ensembl Gene ID:
ENSAPLG00000021214
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041131
50112750 - 50125050
12301
ENSAPLT00000022278
50113681 - 50125050
11370
ENSAPLT00000021696
50113681 - 50125050
11370
ENSAPLT00000045755
50112750 - 50125050
12301